https://github.com/ZJUFanLab/SpaTalk

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
https://github.com/ZJUFanLab/SpaTalk

cell-cell-communication cell-cell-interaction graph-network knowledge-graph ligand-receptor-interaction single-cell spatial-data-analysis spatial-transcriptomics spatially-resolved-transcriptomics

Last synced: 3 months ago
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Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

• Host: GitHub
• URL: https://github.com/ZJUFanLab/SpaTalk
• Owner: ZJUFanLab
• License: gpl-3.0
• Created: 2022-03-29T11:07:05.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2024-06-14T03:53:37.000Z (5 months ago)
• Last Synced: 2024-06-17T08:35:14.438Z (5 months ago)
• Topics: cell-cell-communication, cell-cell-interaction, graph-network, knowledge-graph, ligand-receptor-interaction, single-cell, spatial-data-analysis, spatial-transcriptomics, spatially-resolved-transcriptomics
• Language: R
• Homepage: https://github.com/multitalk/awesome-cell-cell-communication
• Size: 9.81 MB
• Stars: 52
• Watchers: 2
• Forks: 17
• Open Issues: 6
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md

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• awesome-cell-cell-communication - SpaTalk - [R]- SpaTalk is a spatially resolved cell-cell communication inference method relying on the graph network and knowledge graph to model ligand-receptor-target signaling network for either single-cell or spot-based spatially resolved transcriptomic data, e.g., STARmap, MERFISH, seqFISH, Slide-seq, 10X Visium. (Uncategorized / Uncategorized)