https://github.com/aaronwatters/bioviz2022

Bioviz 2022 visualization challenge entry
https://github.com/aaronwatters/bioviz2022

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Bioviz 2022 visualization challenge entry

• Host: GitHub
• URL: https://github.com/aaronwatters/bioviz2022
• Owner: AaronWatters
• License: apache-2.0
• Created: 2022-08-01T15:28:07.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2022-09-22T14:30:05.000Z (over 2 years ago)
• Last Synced: 2024-10-14T06:24:47.160Z (2 months ago)
• Size: 2.44 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# ANNOTED -- bioviz2022

ANNOTED :: Bioviz 2022 visualization challenge entry.

This repository implements ANNOTED -- an interactive visualization

intended to address the requirements of the



Bio+MedVis Challenge @ IEEE VIS 2022: Taming protein beasts through visualization 

(http://biovis.net/2022/biovisChallenges_vis/).





Go to the challenge entry web page interface.



# Screen shots

Below the interface displays

O-linked glycosylation annotations for protein P94312.

By rotating the figure and hovering over the selected annotations

we can see that all such annotations are Serine residues on one side

of the exterior of the protein.



Below the interface displays annotations near a residue where mutations

are known to be associated with disease.



# Credits

The code was implemented by



Aaron Watters. 



Vikram Mulligan provided scientific insight, explanations, and suggestions.

# Notes

Amino acid residue colors were borrowed from



http://acces.ens-lyon.fr/biotic/rastop/help/colour.htm and modified

for better visibility.

Amino acid abbreviations were taken from



https://i-base.info/ttfa/hiv-and-drug-resistance/appendix-3-list-of-amino-acids-and-their-abbreviations/.