https://github.com/aaronwolen/metafiler

Taxonomic profile visualizations
https://github.com/aaronwolen/metafiler

metagenomics

Last synced: 7 months ago
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Taxonomic profile visualizations

• Host: GitHub
• URL: https://github.com/aaronwolen/metafiler
• Owner: aaronwolen
• Created: 2016-06-24T11:46:21.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2024-02-14T22:07:14.000Z (over 1 year ago)
• Last Synced: 2025-01-16T00:51:36.979Z (9 months ago)
• Topics: metagenomics
• Language: R
• Size: 76.2 KB
• Stars: 2
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.Rmd

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README

          
---

output: github_document

---

```{r setup, include=FALSE}

knitr::opts_chunk$set(

  echo = TRUE,

  collapse = TRUE,

  comment = "#>",

  fig.height = 3

)

knitr::opts_knit$set(upload.fun = knitr::imgur_upload)

```

## metafiler

Taxonomic profile visualizations.

[![Travis-CI Build Status](https://travis-ci.org/aaronwolen/metafiler.svg?branch=master)](https://travis-ci.org/aaronwolen/metafiler)

[![codecov](https://codecov.io/gh/aaronwolen/metafiler/branch/master/graph/badge.svg)](https://codecov.io/gh/aaronwolen/metafiler)

## Installation

```{r install, eval=FALSE}

# install.packages(c("devtools", "knitr", "rmarkdown"))

source("http://www.bioconductor.org/biocLite.R")

biocLite("Biobase")

devtools::install_github("aaronwolen/metafiler", build_vignettes = TRUE)

```

## Demo

```{r load-data}

library(metafiler)

data(profiles)

```

```{r profile-plot, message=FALSE}

profiles <- add_max_feature(profiles)

profile_barplot(profiles)

```

More information can be found in the vignette:

```{r vignette, eval=FALSE}

vignette("metafiler-intro", package = "metafiler")

```