https://github.com/aaronwolen/mimager

mimager: The microarray imager
https://github.com/aaronwolen/mimager

bioconductor bioinformatics microarray

Last synced: about 2 months ago
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mimager: The microarray imager

• Host: GitHub
• URL: https://github.com/aaronwolen/mimager
• Owner: aaronwolen
• License: other
• Created: 2016-11-15T17:08:53.000Z (about 8 years ago)
• Default Branch: master
• Last Pushed: 2019-12-08T21:43:40.000Z (about 5 years ago)
• Last Synced: 2024-10-11T21:12:05.475Z (3 months ago)
• Topics: bioconductor, bioinformatics, microarray
• Language: R
• Homepage:
• Size: 134 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# mimager: The Microarray Imager

[![Travis-CI Build Status](https://travis-ci.org/aaronwolen/mimager.svg?branch=master)](https://travis-ci.org/aaronwolen/mimager)

[![codecov](https://codecov.io/gh/aaronwolen/mimager/branch/master/graph/badge.svg)](https://codecov.io/gh/aaronwolen/mimager)

[![Bioc](http://www.bioconductor.org/shields/years-in-bioc/mimager.svg)](https://www.bioconductor.org/packages/devel/bioc/html/mimager.html#since)

*mimager* simplifies the process of imaging microarrays and inspecting them for spatial artifacts by providing a consistent visualization interface that supports many of Bioconductor's microarray object classes.

## Installation

You can install the latest release from Bioconductor:

```r

if (!requireNamespace("BiocManager", quietly=TRUE))

    install.packages("BiocManager")

BiocManager::install("mimager")

```

or the current development version using `devtools`:

```r

# library(devtools)

install_github("aaronwolen/mimager", build_vignettes = TRUE)

```

## Example

```r

library(mimager)

library(affydata)

data("Dilution")

mimage(Dilution, transform = arle, nrows = 1, legend.label = "RLE")

```

![mimager example](http://i.imgur.com/2Wf4y8v.jpg)