https://github.com/abargnesi/spike-bel_extension

Spike to include BEL format extension and translation.
https://github.com/abargnesi/spike-bel_extension

Last synced: 4 months ago
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Spike to include BEL format extension and translation.

• Host: GitHub
• URL: https://github.com/abargnesi/spike-bel_extension
• Owner: abargnesi
• Created: 2015-05-28T13:18:04.000Z (about 10 years ago)
• Default Branch: master
• Last Pushed: 2015-05-28T13:21:45.000Z (about 10 years ago)
• Last Synced: 2025-01-12T17:47:37.019Z (5 months ago)
• Language: Ruby
• Size: 109 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
BEL format extensions

---------------------

*What is done?*

- Loading and registering BEL::Extension::Format extensions

  - Default load includes bel, json/json, and xbel

- Stream parsing where possible (e.g. some JSON implementation do not support this)

- Supports BEL script format

- Supports JSON evidence format

- Simple translation API.

- XML parsing using SAX (REXML)

- SAX handler

  * annotation definitions

  * namespace definitions

  * statements: subject, relationship, object term

  * statements: object statement

- Unified model: Object model including all relevant info for a piece of Evidence.

  * Evidence

  * Annotation definitions

  * Namespace definitions

*What is not done?*

- SAX handler

  * statementGroup

  * annnotationGroup: in the context of either a statement group or statement

    - annotations

    - citation

    - evidence