https://github.com/acastanza/preprocessvelocitytranscriptome

Transcriptome preprocessing for RNA Velocity wrapper module for GenePattern.
https://github.com/acastanza/preprocessvelocitytranscriptome

Last synced: about 1 month ago
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Transcriptome preprocessing for RNA Velocity wrapper module for GenePattern.

• Host: GitHub
• URL: https://github.com/acastanza/preprocessvelocitytranscriptome
• Owner: ACastanza
• License: other
• Created: 2021-02-12T18:10:31.000Z (over 4 years ago)
• Default Branch: main
• Last Pushed: 2022-02-03T20:42:57.000Z (over 3 years ago)
• Last Synced: 2023-04-26T07:28:15.100Z (about 2 years ago)
• Language: R
• Size: 793 KB
• Stars: 0
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# PreprocessVelocityTranscriptome

Extract transcript and intron sequences from the genome sequence using the eisaR package in order to quantify both intronic (unprocessed) and exonic (processed) RNA abundances in each cell with alevin.
A necessary preprocessing step to enable RNA velocity analysis.