https://github.com/adamtaranto/adamtaranto

https://github.com/adamtaranto/adamtaranto

Last synced: about 1 month ago
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• Host: GitHub
• URL: https://github.com/adamtaranto/adamtaranto
• Owner: Adamtaranto
• Created: 2024-11-22T12:22:07.000Z (about 2 months ago)
• Default Branch: main
• Last Pushed: 2024-11-30T01:25:04.000Z (about 1 month ago)
• Last Synced: 2024-11-30T02:26:53.807Z (about 1 month ago)
• Language: Smarty
• Size: 8.79 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
## Adam Taranto

I'm a research software engineer, genome biologist, and educator who helps researchers of all levels

improve their computer science and data science skills.

#### 👩‍💻 What I'm currently working on

- [Adamtaranto/TE-splitter](https://github.com/Adamtaranto/TE-splitter) - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons. (6 days ago)

- [Adamtaranto/teloclip](https://github.com/Adamtaranto/teloclip) -  A tool for the recovery of unassembled telomeres from soft-clipped read alignments. (6 days ago)

- [Adamtaranto/TIRmite](https://github.com/Adamtaranto/TIRmite) - Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons. (6 days ago)

- [Adamtaranto/adamtaranto](https://github.com/Adamtaranto/adamtaranto) -  (1 week ago)

- [oxli-bio/oxli](https://github.com/oxli-bio/oxli) - k-mers and the like (2 weeks ago)

#### 🔭 Latest releases I've contributed to

- [galaxyproject/training-material](https://github.com/galaxyproject/training-material) ([2024-12-01](https://github.com/galaxyproject/training-material/releases/tag/2024-12-01), 3 days ago) - A collection of Galaxy-related training material

- [Adamtaranto/learn-hatch](https://github.com/Adamtaranto/learn-hatch) ([0.1.0](https://github.com/Adamtaranto/learn-hatch/releases/tag/0.1.0), 2 weeks ago) - Learning how to do python packaging with Hatch.

- [Adamtaranto/teloclip](https://github.com/Adamtaranto/teloclip) ([0.1.0](https://github.com/Adamtaranto/teloclip/releases/tag/0.1.0), 3 weeks ago) -  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

- [Adamtaranto/blast-besties](https://github.com/Adamtaranto/blast-besties) ([1.2.0](https://github.com/Adamtaranto/blast-besties/releases/tag/1.2.0), 3 weeks ago) - Rapid discovery of reciprocal best blast pairs.

- [Adamtaranto/TE-insertion-scanner](https://github.com/Adamtaranto/TE-insertion-scanner) ([0.2.1](https://github.com/Adamtaranto/TE-insertion-scanner/releases/tag/0.2.1), 4 weeks ago) - Scan whole genome alignments for signatures of transposon insertion.