https://github.com/adibender/covid19-changepoint-analysis-germany-bavaria

https://github.com/adibender/covid19-changepoint-analysis-germany-bavaria

Last synced: 1 day ago
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• Host: GitHub
• URL: https://github.com/adibender/covid19-changepoint-analysis-germany-bavaria
• Owner: adibender
• Created: 2020-10-27T13:40:50.000Z (about 4 years ago)
• Default Branch: master
• Last Pushed: 2021-01-19T12:35:31.000Z (almost 4 years ago)
• Last Synced: 2024-12-20T23:51:32.538Z (2 days ago)
• Language: R
• Size: 40 KB
• Stars: 1
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Analysis of the early Covid-19 epidemic curve in Germany by regression models with change points

**The code in this repository refers to an initial analysis provided in the preprint. The revised code is available here: https://zenodo.org/record/4449816**

This repository contains code and data needed in order to reproduce results presented in "Analysis of the early Covid-19 epidemic curve in Germany by regression models with change points".

It contains two folders one with data and code for Bavaria, one for Germany:

1. **`bavarian`**:

  - **`data`**: Data that contains the raw data for the analysis + additional data for Figure 1

  - `graphic_bav.R` : graphic for comparison of the three curves (reported, disease onset, back-projection)

  - `backproj_bav.R`: estimates the back-projection and conducts change-point analysis for the infections

  - `disease_onset_bav.R`: conducts change-point analysis for the (raw) disease onset data (without back-projection)

  - `breakpoint_fun.R` and `breakpoint_fun_onset.R`: These script contain the functions that calculate the breakpoints, which are sourced in the `backproj_bav.R` and `disease_onset_bav.R`

2. **`german`**: Equivalent to contents of **`bavarian`** folder except using data for whole Germany.

The whole analysis can be reproduced in one go by running

```r

source("run-analyses.R")

```