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https://github.com/adrianbzg/intermine-data-browser-tool
InterMine Data Browser: a tool for exploring semi-homogeneous biological datasets
https://github.com/adrianbzg/intermine-data-browser-tool
gsoc-2018 gsoc-2019 gsoc-2020 intermine
Last synced: 8 days ago
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InterMine Data Browser: a tool for exploring semi-homogeneous biological datasets
- Host: GitHub
- URL: https://github.com/adrianbzg/intermine-data-browser-tool
- Owner: AdrianBZG
- License: other
- Created: 2018-02-19T09:04:39.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2023-06-10T15:38:54.000Z (over 1 year ago)
- Last Synced: 2024-06-11T19:22:54.658Z (5 months ago)
- Topics: gsoc-2018, gsoc-2019, gsoc-2020, intermine
- Language: JavaScript
- Homepage: http://data-browser.apps.intermine.org/
- Size: 190 MB
- Stars: 4
- Watchers: 3
- Forks: 38
- Open Issues: 3
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Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Description
Faceted search tool to display the data from InterMine database, allowing the users to search easily within the different mines available around InterMine
without the requirement of having an extensive knowledge of the data model.
## Demo / Preview
You can access the demo in [this link](https://intermine-data-browser.netlify.app/).
## Quick Links
- Check out the [latest deployed version](https://intermine-data-browser.netlify.app/)
- Read the latest stable documentation [docs](https://intermine-data-browser.netlify.app/docs)
- Set up the project [to contribute](#contributing-guidelines)
## Required Ontology Concepts (per mine) for each filter
| Filter | Ontology Concepts |
| -------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| GO Annotation | goAnnotation.ontologyTerm.name |
| Dataset Name | dataSets.name |
| Pathway Name | pathways.name |
| Organism short name | Gene.organism.shortName |
| Location | locations.start + locations.end + locations.locatedOn.primaryIdentifier |
| Diseases (OMIM) | diseases.name |
| ClinVar | alleles.clinicalSignificance + alleles.type |
| Protein Localisation | proteinAtlasExpression.cellType + proteinAtlasExpression.tissue.name + proteinAtlasExpression.expressionType + proteinAtlasExpression.level + proteinAtlasExpression.reliability |
| Protein Domain Name | proteins.proteinDomainRegions.proteinDomain.name |
| Interactions | interactions.participant2.symbol + interactions.details.type + interactions.details.dataSets.name |
| Expression | atlasExpression.pValue + atlasExpression.tStatistic + atlasExpression.expression + atlasExpression.dataSets.name |