https://github.com/agahkarakuzu/bids2nf

Emits nextflow channels from Brain Imaging Data Structure data.
https://github.com/agahkarakuzu/bids2nf

bids-apps bids-converter bids-format bidsapp mri neuroimaging neuroscience nextflow qmri reproducible-research

Last synced: 4 months ago
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Emits nextflow channels from Brain Imaging Data Structure data.

• Host: GitHub
• URL: https://github.com/agahkarakuzu/bids2nf
• Owner: agahkarakuzu
• License: mit
• Created: 2025-06-27T03:30:08.000Z (11 months ago)
• Default Branch: main
• Last Pushed: 2025-12-12T16:55:02.000Z (6 months ago)
• Last Synced: 2025-12-13T07:11:53.102Z (6 months ago)
• Topics: bids-apps, bids-converter, bids-format, bidsapp, mri, neuroimaging, neuroscience, nextflow, qmri, reproducible-research
• Language: Nextflow
• Homepage: https://agah.dev/bids2nf
• Size: 791 KB
• Stars: 4
• Watchers: 0
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff
  • Support: docs/supported.md

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README

          
# bids2nf

  

    

    

    bids2nf is a lightweight utility that parses BIDS (Brain Imaging Data Structure) datasets and emits structured Nextflow channels. These channels provide a standardized interface for building scalable, modular, and reproducible neuroimaging workflows with https://nextflow.io.

    

  

[![Documentation](https://github.com/agahkarakuzu/bids2nf/actions/workflows/docs.yml/badge.svg)](https://agah.dev/bids2nf) [![Tests](https://github.com/agahkarakuzu/bids2nf/actions/workflows/test.yml/badge.svg)](https://github.com/agahkarakuzu/bids2nf/actions/workflows/test.yml)

Refer to the [user documentation](https://agah.dev/bids2nf) for setup instructions and usage examples.

## Contributing

Contributions are welcome! Please open issues or pull requests to help improve bids2nf.