https://github.com/alan-turing-institute/protein_folding

Visualise and explore protein structures across time. Incorporate vis of protein amino acid strand (1D), secondary (2D), tertiary structures (3D) across time. Only 2D and 3D are dependent on time.
https://github.com/alan-turing-institute/protein_folding

hut23 hut23-368

Last synced: 5 months ago
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Visualise and explore protein structures across time. Incorporate vis of protein amino acid strand (1D), secondary (2D), tertiary structures (3D) across time. Only 2D and 3D are dependent on time.

• Host: GitHub
• URL: https://github.com/alan-turing-institute/protein_folding
• Owner: alan-turing-institute
• License: mit
• Created: 2020-10-29T14:49:26.000Z (over 4 years ago)
• Default Branch: main
• Last Pushed: 2022-04-08T14:11:13.000Z (about 3 years ago)
• Last Synced: 2024-11-08T15:43:56.671Z (6 months ago)
• Topics: hut23, hut23-368
• Language: Python
• Homepage:
• Size: 19.1 MB
• Stars: 5
• Watchers: 72
• Forks: 0
• Open Issues: 23
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# protein_folding

![protein1](https://github.com/alan-turing-institute/protein_folding/blob/main/media/protein1.jpg)

# Summary

Visualise and explore protein structures across time. Incorporate vis of protein amino acid strand (1D), secondary (2D), tertiary structures (3D) across time. Only 2D and 3D are dependent on time.

# Key Functionalities

Visualise any PDB file and create interpolation between two states.

Create custom slices of chains of Amino Acids.

Visualise Heavy water data

Configure protein visualisations (3 LODs)

Animate between 2 states

# Installation

1. Download, create an account and install [Rhino3D](https://www.rhino3d.com/) v. 7 or higher*. 

2. Download and install [Human UI](https://www.food4rhino.com/app/human-ui) for Rhino Grasshopper (If not already installed with Rhino) NOTE!: Human UI does not work for Mac

3. Clone this repository in your pc.

4. Load the visual editor grasshopper by typing "grasshopper" in the Rhino's command line.

5. Open or drag and drop the ProteinGenerator.gh file into grasshopper. 

(*) There is a 3 month trial version available for Rhino, which you can download for free. 

Please look at minimum specifications for running Rhino [here](https://www.rhino3d.com/7/system-requirements/).

# Quick Start guide

To change the appearence of icons in GH, go from the main menu to display-->draw icons

## Wiki

Look at the [wiki](https://github.com/alan-turing-institute/protein_folding/wiki) for documentation on what are the different scripts and how to configure the platform

[Hut23 issue](https://github.com/alan-turing-institute/Hut23/issues/368)