https://github.com/alecxcode/cell-operating-system

A set of programs to simulate functioning of a biological cell
https://github.com/alecxcode/cell-operating-system

biochemistry bioinformatics biology cell-biology cell-modeling computational-biology molecular-biology

Last synced: 21 days ago
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A set of programs to simulate functioning of a biological cell

• Host: GitHub
• URL: https://github.com/alecxcode/cell-operating-system
• Owner: alecxcode
• Created: 2026-03-26T11:33:15.000Z (4 months ago)
• Default Branch: main
• Last Pushed: 2026-03-26T12:15:07.000Z (4 months ago)
• Last Synced: 2026-03-27T04:55:04.814Z (4 months ago)
• Topics: biochemistry, bioinformatics, biology, cell-biology, cell-modeling, computational-biology, molecular-biology
• Language: Python
• Homepage:
• Size: 3.91 KB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: readme.md

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README

          
# Cell Operating System

## Objective:

This repository aims to develop a simulation of a single biological cell with its biochemical processes. It is a high-level simulation, yet designed to be a reliable model.

## Current Progress:

 - `glycolysis.py`: initial script modeling metabolic pathways.

 - `molecular.py`: initial script for genetic code processing.

 - `codons.py`: genetic code dictionaries.

## TODO:

 - [ ] Switch concentrations to numbers of molecules.

**Note:** This is an evolving project at early stages of its development.