https://github.com/alertadengue/alertadengueanalise

https://github.com/alertadengue/alertadengueanalise

Last synced: 4 days ago
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• Host: GitHub
• URL: https://github.com/alertadengue/alertadengueanalise
• Owner: AlertaDengue
• Created: 2014-07-10T18:32:45.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2024-03-25T11:48:53.000Z (10 months ago)
• Last Synced: 2024-04-14T13:06:29.931Z (10 months ago)
• Language: R
• Size: 198 MB
• Stars: 3
• Watchers: 18
• Forks: 7
• Open Issues: 2
• Metadata Files:
  • Readme: README.md

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README

        
# AlertaDengueAnalise

## Gerar o objeto alerta de forma remota

Para gerar o alerta, as seguintes bibliotecas são necessárias: 

```bash

if (!require('foreign')){install.packages("foreign")} 

if (!require('forecast')){install.packages("forecast")} 

if (!require('RPostgreSQL')){install.packages("RPostgreSQL")} 

if (!require('xtable')){install.packages("xtable")} 

if (!require('zoo')){install.packages("zoo")} 

if (!require('tidyverse')){install.packages("tidyverse")} 

if (!require('assertthat')){install.packages("assertthat")} 

if (!require('futile.logger')){install.packages("futile.logger")} 

if (!require('gridExtra')){install.packages("gridExtra")} 

if (!require('ggridges')){install.packages("ggridges")} 

if (!require('grid')){install.packages("grid")} 

if (!require('cgwtools')){install.packages("cgwtools")} 

if (!require('AlertTools')){

    if(!require("devtools")) install.packages("devtools")

    library("devtools")

    install_github("AlertaDengue/AlertTools", dependencies = TRUE)} 

if (!require('ggTimeSeries')){

    if(!require("devtools")) install.packages("devtools")

    library("devtools")

    install_github("AtherEnergy/ggTimeSeries")} 

# INLA: https://www.r-inla.org/download-install

if (!requireNamespace("BiocManager", quietly = TRUE))

  install.packages("BiocManager")

BiocManager::install(c("graph", "Rgraphviz"), dep=TRUE)

install.packages("INLA",repos=c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"), dep=TRUE)

```

Essas bibliotecas estão listadas: (https://github.com/AlertaDengue/AlertaDengueAnalise/blob/master/config/config_global_2020.R)

Para rodar o script é necessário uma conexão via chave ssh com o sistema.

### Gerar o alerta

O código parar gerar o objeto alerta estadual: https://github.com/AlertaDengue/AlertaDengueAnalise/blob/master/main/main_BR.R