https://github.com/alexpreynolds/hilbert-genome-cooler

Exploring the Cooler format to store whole-genome datasets arranged into a Hilbert curve
https://github.com/alexpreynolds/hilbert-genome-cooler

Last synced: about 22 hours ago
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Exploring the Cooler format to store whole-genome datasets arranged into a Hilbert curve

• Host: GitHub
• URL: https://github.com/alexpreynolds/hilbert-genome-cooler
• Owner: alexpreynolds
• Created: 2022-12-02T12:08:28.000Z (almost 2 years ago)
• Default Branch: main
• Last Pushed: 2023-01-31T21:31:08.000Z (almost 2 years ago)
• Last Synced: 2024-04-08T18:03:23.707Z (7 months ago)
• Language: Jupyter Notebook
• Size: 27.8 MB
• Stars: 1
• Watchers: 4
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# hilbert-genome-cooler

Exploring the Cooler format to store whole-genome datasets arranged into a Hilbert curve

## `hilbertgenome`

A Python library to generate a multiscale `mcool` file of categorical data derived from a whole-genome epilogos "scores"-formatted file.

## `HilbertGenomeCooler.ipynb`

A Jupyter notebook that demonstrates use of the `hilbertgenome` API to process a test dataset.

## `hgc-viewer`

A React web application using the HiGlass client component to render and interact with an `mcool` file ingested into a HiGlass backend server.