https://github.com/alicewriteswrongs/fastqtrim

https://github.com/alicewriteswrongs/fastqtrim

Last synced: 3 months ago
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• Host: GitHub
• URL: https://github.com/alicewriteswrongs/fastqtrim
• Owner: alicewriteswrongs
• License: other
• Created: 2014-01-14T18:11:55.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2014-01-14T18:11:57.000Z (over 11 years ago)
• Last Synced: 2025-02-10T01:46:29.036Z (5 months ago)
• Size: 109 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

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README

        
#Trimmer for fastq files

A quick python script for trimming a specified number of bases from the beginning of each read in a fastq file.

###Usage

usage: python trimmer.py [-h] [-s START] [INPUT] [OUTPUT]

*	[-s START] trims all bases before this point from the alignment

*	[INPUT]	file to be modified

*	[OUTPUT] defaults to stdout, file write not yet implemented