https://github.com/alicewriteswrongs/gcbyposition

GC content by position in fastq alignment
https://github.com/alicewriteswrongs/gcbyposition

Last synced: 24 days ago
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GC content by position in fastq alignment

• Host: GitHub
• URL: https://github.com/alicewriteswrongs/gcbyposition
• Owner: alicewriteswrongs
• Created: 2014-01-08T22:33:22.000Z (about 11 years ago)
• Default Branch: master
• Last Pushed: 2014-01-10T15:48:42.000Z (about 11 years ago)
• Last Synced: 2024-10-30T07:27:12.791Z (2 months ago)
• Language: Python
• Size: 1.68 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
#G/C Content by Base Pair

A short python script to calculate the g/c content for each position in an alignment in fastq format.

This script:

*	Reads in a gzipped fq file

*	Returns a dictionary with:

	*	key: position in alignment

	*	value: proportion of g/c sites at position

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