https://github.com/alicewriteswrongs/popgenproject

https://github.com/alicewriteswrongs/popgenproject

Last synced: about 1 month ago
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• Host: GitHub
• URL: https://github.com/alicewriteswrongs/popgenproject
• Owner: alicewriteswrongs
• Created: 2014-11-05T16:21:33.000Z (about 10 years ago)
• Default Branch: master
• Last Pushed: 2015-03-04T19:56:09.000Z (almost 10 years ago)
• Last Synced: 2024-10-30T07:27:04.367Z (3 months ago)
• Language: Python
• Size: 191 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
#Population Genetics project

Analyzing our dataset using dadi. Two scripts so far, one to convert

Mike's datafile to the format that dadi wants, and one to start doing our

analysis.

Usage:

    python makeSnpFile.py inputFile.out --dadi > outputFile.txt

Or, for help:

    python makeSnpFile.py --help

This will give you an `outputFile.txt` which you can use to generate an allele

frequency spectrum using dadi.