https://github.com/allencellmodeling/brightfield2fish

https://github.com/allencellmodeling/brightfield2fish

Last synced: 3 months ago
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• Host: GitHub
• URL: https://github.com/allencellmodeling/brightfield2fish
• Owner: AllenCellModeling
• License: other
• Created: 2019-03-13T22:03:12.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2019-07-17T17:55:35.000Z (over 6 years ago)
• Last Synced: 2025-01-02T23:14:20.440Z (about 1 year ago)
• Language: Python
• Size: 193 KB
• Stars: 2
• Watchers: 2
• Forks: 0
• Open Issues: 5
• Metadata Files:
  • Readme: README.rst
  • Changelog: HISTORY.rst
  • Contributing: CONTRIBUTING.rst
  • License: LICENSE
  • Authors: AUTHORS.rst

Awesome Lists containing this project

README

          
We are no longer actively maintaining this repository. All active work by the Allen Institute for Cell Science is located under the `AllenCell `__ organization.

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brightfield2fish

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.. image:: https://travis-ci.com/AllenCellModeling/brightfield2fish.svg?branch=master

        :target: https://travis-ci.com/AllenCellModeling/brightfield2fish

.. image:: https://readthedocs.org/projects/brightfield2fish/badge/?version=latest

        :target: https://brightfield2fish.readthedocs.io/en/latest/?badge=latest

      

.. image:: https://codecov.io/gh/AllenCellModeling/brightfield2fish/branch/master/graph/badge.svg

        :target: https://codecov.io/gh/AllenCellModeling/brightfield2fish

Translate brightfield images to and from FISH assay

* Free software: Allen Institute Software License

* Documentation: https://brightfield2fish.readthedocs.io.

Installation

------------

::

    $ conda create --name brightfield2fish python=3.7

    $ conda activate brightfield2fish

    $ cd brightfield2fish/

    $ pip install -e .[test]

    $ pip install -e .[dev]

    $ pre-commit install