https://github.com/alleninstitute/neuroanalysis

Modular analysis tools for neurophysiology data
https://github.com/alleninstitute/neuroanalysis

Last synced: about 1 year ago
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Modular analysis tools for neurophysiology data

• Host: GitHub
• URL: https://github.com/alleninstitute/neuroanalysis
• Owner: AllenInstitute
• License: mit
• Created: 2017-07-24T19:05:06.000Z (almost 9 years ago)
• Default Branch: master
• Last Pushed: 2025-03-26T19:56:40.000Z (over 1 year ago)
• Last Synced: 2025-04-11T20:08:51.387Z (about 1 year ago)
• Language: Python
• Size: 8.06 MB
• Stars: 8
• Watchers: 5
• Forks: 10
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE.txt

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README

          
Neuroanalysis

=============

Modular and interactive tools for analysis of neurophysiology data, with emphasis on 

patch-clamp electrophysiology.

[![Tests](https://github.com/AllenInstitute/neuroanalysis/actions/workflows/test.yml/badge.svg)](https://github.com/AllenInstitute/neuroanalysis/actions/workflows/test.yml)

[![PyPI version](https://badge.fury.io/py/neuroanalysis.svg)](https://badge.fury.io/py/neuroanalysis)

* Functions for running common analysis algorithms

    * Synaptic/calcium event detection and characterization

    * Synaptic release modeling

    * VC and CC spike detection and characterization

    * VC and CC test pulse analysis

    * Basic signal processing (filtering, baseline removal, etc.)

* Data abstraction layer to allow adapting new data formats (see neuroanalysis/data.py)

* Re-usable user interface elements for implementing common analysis tasks

Status

------

This project is early in development and does not yet have a stable API.

Issues and pull requests are accepted (see CONTRIBUTING.md), but may not be 

reviewed or accepted on any fixed schedule.