https://github.com/andersen-lab/wnv-phylogeography
Preliminary west nile virus phylogeography analysis in California
https://github.com/andersen-lab/wnv-phylogeography
Last synced: about 1 year ago
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Preliminary west nile virus phylogeography analysis in California
- Host: GitHub
- URL: https://github.com/andersen-lab/wnv-phylogeography
- Owner: andersen-lab
- Created: 2019-11-08T18:03:06.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2019-11-08T18:17:30.000Z (over 6 years ago)
- Last Synced: 2025-02-01T06:25:21.180Z (over 1 year ago)
- Language: Python
- Homepage:
- Size: 13.9 MB
- Stars: 2
- Watchers: 5
- Forks: 0
- Open Issues: 1
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Metadata Files:
- Readme: README.md
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README
# Preliminary West Nile virus phylogeography in California: 2003 to 2017
This analysis was produced using data collected and generated as part of [West Nile 4k project](https://westnile4k.org/).
[Youtube link](https://youtu.be/O4dSO9LyP7Y).
Tree was generated using [BEAST v1.10.4](http://beast.community/).
Rendered video is for use under [CC-BY-SA-4](https://choosealicense.com/licenses/cc-by-sa-4.0/) and available in [movie](./movie/wnv_ca_phylogeography.mp4).
#### Inspired by [Phylogeography of 2014-2015 Ebola virus epidemic by Gytis Dudas](https://github.com/ebov/space-time).
**Disclaimer**. Please note that this data is still based on work in progress and should be considered preliminary. If you intend to include any of these data in publications, please let us know – otherwise please feel free to download and use without restrictions. We have shared this data with the hope that people will download and use it, as well as scrutinize it so we can improve our methods and analyses. Please contact us if you have any questions or comments – we’ll buy beers for #ResearchParasites that spot flaws and faults in the data and come up with improvements!
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**Andersen Lab**
The Scripps Research Institute
La Jolla, CA, USA
[data@andersen-lab.com](mailto:data@andersen-lab.com)