https://github.com/andreaguarracino/opentrons
https://github.com/andreaguarracino/opentrons
Last synced: about 2 months ago
JSON representation
- Host: GitHub
- URL: https://github.com/andreaguarracino/opentrons
- Owner: AndreaGuarracino
- License: mit
- Created: 2023-12-07T21:16:11.000Z (over 1 year ago)
- Default Branch: master
- Last Pushed: 2024-11-08T21:22:09.000Z (7 months ago)
- Last Synced: 2025-04-10T22:45:25.567Z (about 2 months ago)
- Language: Python
- Size: 23.4 KB
- Stars: 2
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# opentrons
## Opentron App
Download it from https://opentrons.com/ot-app/.
See https://support.opentrons.com/s/article/Troubleshooting-USB-connection-problems-on-Ubuntu for problems.
## Protocol simulator
### Python issue
#### 2023/12/07
As Python 3.10 currently does not allow for protocol simulation (https://support.opentrons.com/s/article/Simulating-OT-2-protocols-on-your-computer), it is recommended to use a version between 3.7.0 and 3.9.9.
For `Ubuntu 23.04`:
```shell
sudo apt-get update
sudo apt-get install -y build-essential zlib1g-dev libncurses5-dev libgdbm-dev libnss3-dev libssl-dev libreadline-dev libffi-dev wget
cd ~
wget https://www.python.org/ftp/python/3.9.0/Python-3.9.0.tar.xz
tar -xf Python-3.9.0.tar.xz
cd Python-3.9.0
./configure --enable-optimizations
make -j `nproc`
sudo make altinstall
python3.9 --version
```
#### 2024/04/24
With Python 3.9, I get an import error related to the `ParamSpec` type hint from the `typing` module. This error occurs because `ParamSpec` was introduced in Python 3.10.
For `Ubuntu 23.10`:
```shell
sudo apt-get update
sudo apt-get install -y build-essential zlib1g-dev libncurses5-dev libgdbm-dev libnss3-dev libssl-dev libreadline-dev libffi-dev wget
cd ~
wget https://www.python.org/ftp/python/3.10.0/Python-3.10.0.tar.xz
tar -xf Python-3.10.0.tar.xz
cd Python-3.10.0
./configure --enable-optimizations
make -j `nproc`
sudo make altinstall
python3.10 --version
```
### API
Install the Opentrons API:
```shell
mkdir -p ~/.venvs
python3.10 -m venv ~/.venvs/opentrons
~/.venvs/opentrons/bin/python3.10 -m pip install --upgrade opentrons
```
To simulate protocols:
```shell
source /home/guarracino/.venvs/opentrons/bin/activate
opentrons_simulate my_protocol.py
```
To check the `Supported Protocol API Versions`:
- `./Opentrons-v7.3.0-linux-b43335.AppImage`
- click `Devices`
- select the robot (`OT-2 OT2CEP20221010R03`)
- click 3 points and then `Robot settings`
- click `Advanced`
- `Supported Protocol API Versions`: `v2.0 - v2.17`