https://github.com/annarufas/matlab-bats-time-series-analysis

MATLAB scripts for analysing Bermuda Atlantic Time-series Study (BATS) data as part of Oxford's 2024 4th-year undergraduate field trip work at the Bermuda Institute of Ocean Sciences (BIOS).
https://github.com/annarufas/matlab-bats-time-series-analysis

bats-bios matlab ocean-data ocean-time-series

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MATLAB scripts for analysing Bermuda Atlantic Time-series Study (BATS) data as part of Oxford's 2024 4th-year undergraduate field trip work at the Bermuda Institute of Ocean Sciences (BIOS).

• Host: GitHub
• URL: https://github.com/annarufas/matlab-bats-time-series-analysis
• Owner: annarufas
• Created: 2024-09-15T19:32:08.000Z (2 months ago)
• Default Branch: master
• Last Pushed: 2024-11-05T15:12:19.000Z (12 days ago)
• Last Synced: 2024-11-05T16:29:00.117Z (12 days ago)
• Topics: bats-bios, matlab, ocean-data, ocean-time-series
• Language: MATLAB
• Homepage:
• Size: 81.3 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

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README

        
## Analysing the Bermuda Atlantic Time-series Study (BATS) Data in MATLAB

This repository contains a collection of MATLAB scripts that I have developed to read, format and visualise freely-available oceanographic datasets from the Bermuda Atlantic Time-series Study (BATS). These scripts were created to support the lab sessions in the Oxford’s 4th-year undergraduate field trip course. The visualisation style emulates the popular **Ocean Data View (ODV)** format, following the toolbox that the students will use in the lab session. The datasets analysed include: **bottle data**, **pigment data**, **net primary production**, **particulate fluxes**, **zooplankton biomass** and **bacteria production**.

![README_cover](https://github.com/user-attachments/assets/98435e8c-5a95-4f37-9db2-b666eb852ac2)

## Requirements

To use the content of this repository, ensure you have the following.

- [MATLAB](https://mathworks.com/products/matlab.html) version R2021a or later installed.

- Third-party functions downloaded from [MATLAB'S File Exchange](https://mathworks.com/matlabcentral/fileexchange/): `brewermap` and `subaxis`. Once downloaded, please place the functions under the `./resources/external/` directory.

- Oceanographic datasets from the Bermuda Atlantic Time-series Study (BATS) downloaded from [BATS/BIOS website](https://bats.bios.asu.edu/bats-data/): `bats_bottle.txt`, `bats_pigments.txt`, `bats_primary_production_v003.txt`, `bats_flux_v003.txt`, `bats_zooplankton.txt` and `bats_bacteria_production.txt`. Once downloaded, please place the files under a `./data/` directory.

- Oceanographic dataset of particle flux data from the Oceanic Flux Program (OFP) downloaded from [BCO-DMO](https://www.bco-dmo.org/dataset/704722): `OFP_particle_flux.csv`. Once downloaded, please place the file under the `./data/raw/` directory.