https://github.com/anuradhawick/anuradhawick

Readme for my Github
https://github.com/anuradhawick/anuradhawick

Last synced: 23 days ago
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Readme for my Github

• Host: GitHub
• URL: https://github.com/anuradhawick/anuradhawick
• Owner: anuradhawick
• Created: 2021-04-30T01:21:21.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2024-09-07T09:29:40.000Z (2 months ago)
• Last Synced: 2024-09-07T10:47:24.354Z (2 months ago)
• Homepage: https://anuradhawick.com
• Size: 30.3 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        


G'day! Welcome to my GitHub home 👋



I’m Anuradha—I’m and [Solutions Architect for Bioinformatics Products at CSIRO](https://people.csiro.au/w/a/anuradha-wickramarachchi), Australia. I got my Ph.D. in computer science from the [School of Computing](https://cs.anu.edu.au/) at the [Australian National University](https://www.anu.edu.au/) in Canberra, Australia. I enjoy writing code, playing games and IoT DIYs.

Check out my personal website [anuradhawick.com](https://www.anuradhawick.com).

Check my recent web-site development at [Vinyl.LK](https://www.vinyl.lk/). This is implemented in AWS with Lambda, S3, Cloudfront and Route53! Check repo in [Github](https://github.com/anuradhawick/vinyl-search)   

- 🔭 I build bioinformatics software/tools, browse through my repos

- 🔭 I've worked on clustering TGS sequencing data (binning long reads)

- 🌱 Interested areas include Machine Learning, Bioinformatics and Computational Biology

- 📫 How to reach me: [email protected]

- 🏠 Check out my portfolio website: https://anuradhawick.com

- 📝 Check out my Medium Blog: https://medium.com/@anuradhawick

# My Apps [my website](https://anuradhawick.com/apps/)

## 💻 [TypeFaster](https://typefaster.anuradhawick.com)

A platform to practice your typiing. Find the repo - [https://github.com/anuradhawick/typefaster](https://github.com/anuradhawick/typefaster) .You can access the demo on [https://typefaster.anuradhawick.com](https://typefaster.anuradhawick.com)

## 📎 [Clipper](https://github.com/anuradhawick/clipper)

A versatile clipboard management and note-taking application designed specifically for developers.

# AI/ML/Bioinformatics Researcher tools

I feel quite thrilled about few of my recent work! So decided to showcase here. 😎

## 🧬 [Kmertools](https://github.com/anuradhawick/kmertools)

kmertools is a k-mer based feature extraction tool designed to support metagenomics and other bioinformatics analytics. 

## 🧬 [RsBio-Seq](https://github.com/anuradhawick/rsbio-seq)

A faster FASTA/FASTQ reader with very small footprint in your code compared to Biopython.

## 🧬 [Long Reads Specialized Binner (MetaBCC-LR)](https://github.com/anuradhawick/MetaBCC-LR)

First long read binner that uses both coverage and composition both in metagenomics binning. Here we introduce a neat trick to estimate read coverage via kmers and build a feature vector for coverage.

## 🎥 [YOLO Object Annotator for Computer Vision](https://github.com/anuradhawick/Object-Annotation-Maker)

This enables generation of training images for YOLO given a set of objects and backgrounds. Makes life a lot easier as manually annotating real images is labour intensive.

## 🌐 [AWS Boilerplate (Ready to use with Router)](https://github.com/anuradhawick/aws-lambda-serverless-boilerplate)

This came as a requirement in [Vinyl.LK](https://www.vinyl.lk/). This is a solid template for any AWS lambda based project. All the yaml files and templates are included with sufficient(I hope) help and documentation.

## 👨🏽‍💻 [Algorithm Competitions](https://github.com/anuradhawick/algo-competitions)

Here you will find how I have done some of the challenging code events in the past few years. I will try to migrate the things I have done before my time in GitHub as we go along.