https://github.com/anuradhawick/cuda-k-mer-counting
Code used for brainstorming 2022-Jun
https://github.com/anuradhawick/cuda-k-mer-counting
Last synced: about 2 months ago
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Code used for brainstorming 2022-Jun
- Host: GitHub
- URL: https://github.com/anuradhawick/cuda-k-mer-counting
- Owner: anuradhawick
- License: other
- Created: 2022-08-19T01:59:59.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2022-08-19T02:06:45.000Z (almost 3 years ago)
- Last Synced: 2025-02-05T11:18:31.985Z (4 months ago)
- Language: Cuda
- Size: 7.81 KB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE.txt
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README
# CUDA-k-mer-counting
By - Anuradha Wickramarachchi
## Compile code
```bash
nvcc k-mer-counting-improved.cu -o kmercountingimproved -lz --dopt=on -gencode arch=compute_80,code=sm_80 -Xcompiler -fopenmp -O3
```
## Docs and refs
* intro https://www.nvidia.com/docs/IO/116711/sc11-cuda-c-basics.pdf
* possible optimizations https://on-demand.gputechconf.com/gtc/2014/presentations/S4158-cuda-streams-best-practices-common-pitfalls.pdf