Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

Awesome Lists | Featured Topics | Projects

https://github.com/ap6yc/oar

A research project repository for Ontological Adaptive Resonance (OAR) algorithms and experiments.
https://github.com/ap6yc/oar

Last synced: about 1 month ago
JSON representation

A research project repository for Ontological Adaptive Resonance (OAR) algorithms and experiments.

Awesome Lists containing this project

README 

        
[![oar-header](https://github.com/AP6YC/FileStorage/blob/main/OAR/header.png?raw=true)][docs-url]



**O**ntologies with **A**daptive **R**esonance.

Please see the [documentation][docs-url].



| **Documentation** | **Docs Build Status** | **Coveralls** |

|:-----------------:|:---------------------:|:--------:|

| [![Docs][docs-img]][docs-url] | [![Docs Status][doc-status-img]][doc-status-url] | [![Coveralls][coveralls-img]][coveralls-url] |

| **Zenodo DOI** | **Testing Status** | **Codecov** |

| [![DOI][zenodo-img]][zenodo-url] | [![CI Status][ci-img]][ci-url] |  [![Codecov][codecov-img]][codecov-url] |



[doc-status-img]: https://github.com/AP6YC/OAR/actions/workflows/Documentation.yml/badge.svg

[doc-status-url]: https://github.com/AP6YC/OAR/actions/workflows/Documentation.yml



[docs-img]: https://img.shields.io/badge/docs-blue.svg

[docs-url]: https://AP6YC.github.io/OAR/dev/



[ci-img]: https://github.com/AP6YC/OAR/workflows/CI/badge.svg

[ci-url]: https://github.com/AP6YC/OAR/actions?query=workflow%3ACI



[codecov-img]: https://codecov.io/gh/AP6YC/OAR/branch/main/graph/badge.svg

[codecov-url]: https://codecov.io/gh/AP6YC/OAR



[coveralls-img]: https://coveralls.io/repos/github/AP6YC/OAR/badge.svg?branch=main

[coveralls-url]: https://coveralls.io/github/AP6YC/OAR?branch=main



[zenodo-img]: https://zenodo.org/badge/601743357.svg

[zenodo-url]: https://zenodo.org/badge/latestdoi/601743357



## Table of Contents



- [Table of Contents](#table-of-contents)

- [Overview](#overview)

- [Usage](#usage)

- [Links](#links)

  - [Ontology](#ontology)

  - [Packages](#packages)

  - [Miscellaneous](#miscellaneous)

- [Attribution](#attribution)

  - [Citations](#citations)

  - [Authors](#authors)

  - [Assets](#assets)



[1]: https://julialang.org/

[2]: https://www.python.org/

[3]: https://docs.julialang.org/en/v1/

[4]: https://juliadynamics.github.io/DrWatson.jl/dev/

[5]: https://jupyter.org/

[6]: https://docs.github.com/en/actions/using-workflows

[7]: https://documenter.juliadocs.org/stable/

[8]: https://democards.juliadocs.org/stable/

[9]: https://www.rust-lang.org/

[10]: https://ap6yc.github.io/OAR/dev/man/languages/

[11]: https://docs.python.org/

[12]: https://www.rust-lang.org/learn

[13]: https://plutojl.org/



## Overview



This repository is a research project for working with ontologies with Adaptive Resonance Theory (ART) algorithms.



This project contains [`Julia`][1] ([docs][3]), [`Python`][2] ([docs][11]), and [`Rust`][9] ([docs][12]) experiments, so typical project structures for these languages are overlapping in this repository.

This generally does not result in software collision, but this is noted here to clarify any confusion that could arise from this to the reader.



The majority of the project is structured as a [`DrWatson.jl`][4] research project, but the source files are organized into a `Julia` Package for documentation, testing, and reproducibility.

Documentation is generated by [`Documenter.jl`][7] and [`DemoCards.jl`][8] via a [GitHub workflow][6] and statically hosted [in this repository][docs-url].



## Usage



This project has both [`Julia`][1], [`Python`][2], and [`Rust`][9] code, so files and experiments using each of these languages are listed separately.

Some experiments are implemented as scripts in their respective languages, and others are implemented as [`Jupyter notebooks`][5] to be run with IPython or IJulia kernels.

Some `Julia` experiments are even implemented in [`Pluto.jl`][13] notebooks, which are interactive environments specifically designed for use with `Julia`.



For a detailed usage guide and outline, please see the [Languages][10] section in the documentation.



## Links



This section contains several categories of links to useful resources when working with ontologies and the programming techniques of this research project.



### Ontology



- [SIPOC](https://www.wikiwand.com/en/SIPOC)

- [QSAR](https://www.wikiwand.com/en/Quantitative_structure%E2%80%93activity_relationship)

- [Protege](https://protege.stanford.edu/)

- [Barry Smith homepage](http://ontology.buffalo.edu/smith/)



### Packages



- [Julia word2vec Wrapper](https://github.com/JuliaText/Word2Vec.jl)

- [GPT/Hugging Face Tokenizer](https://github.com/huggingface/tokenizers)

- [Fusion 360 Gallery Datset](https://github.com/AutodeskAILab/Fusion360GalleryDataset) ([paper](https://arxiv.org/pdf/2010.02392.pdf))



### Miscellaneous



- [FBVector](https://github.com/facebook/folly/blob/main/folly/docs/FBVector.md)

- [Lotka-Volterra](https://www.wikiwand.com/en/Lotka%E2%80%93Volterra_equations)

- [Karpathy's Makemore Tutorial](https://youtu.be/PaCmpygFfXo)



## Attribution



### Citations



- [START](https://scholarsmine.mst.edu/masters_theses/44):

  - _Meuth, Ryan J., "Adaptive multi-vehicle mission planning for search area coverage" (2007). Masters Theses. 44. [https://scholarsmine.mst.edu/masters_theses/44](https://scholarsmine.mst.edu/masters_theses/44)_



### Authors



- Sasha Petrenko 

- Dr. Daniel Hier 



### Assets



This project uses the following images:



- [Boat icons created by Freepik - Flaticon](https://www.flaticon.com/free-icons/boat) ([boat_2383726](https://www.flaticon.com/free-icon/boat_2383726))

- [Oar icons created by Freepik - Flaticon](https://www.flaticon.com/free-icons/oar) ([boat_196204](https://www.flaticon.com/free-icon/boat_196204))



This project also uses the following fonts in generated imagery:



- [Float the Boat Font by Chequered Ink](https://www.fontspace.com/float-the-boat-font-f30073)