https://github.com/apahl/cellpainting

Tools for Processing Results from CellPainting Assay
https://github.com/apahl/cellpainting

cellprofiler nim-lang pandas rdkit

Last synced: about 1 year ago
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Tools for Processing Results from CellPainting Assay

• Host: GitHub
• URL: https://github.com/apahl/cellpainting
• Owner: apahl
• License: mit
• Created: 2017-06-12T14:44:27.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2017-11-15T16:34:58.000Z (over 8 years ago)
• Last Synced: 2025-05-05T14:05:14.936Z (about 1 year ago)
• Topics: cellprofiler, nim-lang, pandas, rdkit
• Language: Python
• Homepage:
• Size: 181 KB
• Stars: 2
• Watchers: 1
• Forks: 4
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# Tools for Processing Results from CellPainting Assay

This is a set of tools used for processing results generated by [CellProfiler](https://cellprofiler.org) for the CellPainting asssay.

The tools are designed to be used in a Jupyter Notebook and have been written in Python3.

The starting point is a `Results.csv` file that contains the CellProfiler output aggregated as means on site level.

Further documentation, including Jupyter Notebooks with example workflows, will follow.