https://github.com/apeltzer/clipandmerge

The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.
https://github.com/apeltzer/clipandmerge

adna clip merging ngs reads

Last synced: 9 months ago
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The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.

• Host: GitHub
• URL: https://github.com/apeltzer/clipandmerge
• Owner: apeltzer
• License: gpl-3.0
• Created: 2016-03-03T14:01:26.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2024-09-04T15:40:29.000Z (almost 2 years ago)
• Last Synced: 2025-03-18T22:38:16.913Z (about 1 year ago)
• Topics: adna, clip, merging, ngs, reads
• Language: Java
• Size: 263 KB
• Stars: 2
• Watchers: 1
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# ClipAndMerge

The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.

[![Build Status](https://travis-ci.org/apeltzer/ClipAndMerge.svg?branch=master)](https://travis-ci.org/apeltzer/ClipAndMerge)

[![codecov](https://codecov.io/gh/apeltzer/ClipAndMerge/branch/master/graph/badge.svg)](https://codecov.io/gh/apeltzer/ClipAndMerge)

[ ![Download](https://api.bintray.com/packages/apeltzer/EAGER/ClipAndMerge/images/download.svg) ](https://bintray.com/apeltzer/EAGER/ClipAndMerge/_latestVersion)

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io/recipes/plastid/README.html)

Through BioContainers, there is also an according Docker container available, that can be used with Singularity, too. 

Author: Günter Jäger 

Contact Alexander Peltzer  for questions regarding the tool or write him on GitHub/open a ticket.

Releases: The releases for this project can be found directly downloaded from here in the Releases section.

If you find the tool useful, please cite the main EAGER paper under https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0918-z.