https://github.com/applicativesystem/arabidopsis-api-analyzer

easing your access to arabidopsis tair
https://github.com/applicativesystem/arabidopsis-api-analyzer

api arabidopsis arabidopsis-thaliana genome-analysis genome-annotation genome-sequencing tair tair3

Last synced: 10 months ago
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easing your access to arabidopsis tair

• Host: GitHub
• URL: https://github.com/applicativesystem/arabidopsis-api-analyzer
• Owner: applicativesystem
• License: mit
• Created: 2024-08-21T18:20:24.000Z (almost 2 years ago)
• Default Branch: main
• Last Pushed: 2024-08-21T20:02:03.000Z (almost 2 years ago)
• Last Synced: 2024-11-10T20:18:03.229Z (over 1 year ago)
• Topics: api, arabidopsis, arabidopsis-thaliana, genome-analysis, genome-annotation, genome-sequencing, tair, tair3
• Language: Python
• Homepage:
• Size: 8.89 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# arabidopsis-api-tair

- A function which will make your access to tair datasets easier for the arabidopsis research.

- Run this function and it will run and download the arabidopsis datasets and make the required analysis.

- It will make all the dictionary with nested lists and tuples which will provide a easy access to the tair dataframe.  Y

- You dont have to go to tair website and check the gene conversion or the uniprot conversions, or the mapping or checking for the coordinates.

- This provides a nested dictionary with the nested list and tuples and you can simply search them.

- No need to make the SQL database as it downloads the file and then remove them after the search.

- This function is a part of the tairaccession package (pip install tairaccession), however you can use this separately.

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany