https://github.com/applicativesystem/arabidopsis-genome-analyzer

desktop application for analysis of the complete arabidopsis genome
https://github.com/applicativesystem/arabidopsis-genome-analyzer

arabidopsis-thaliana bioinformatics desktop-app desktop-application genome-analysis genome-annotation webapp

Last synced: 18 days ago
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desktop application for analysis of the complete arabidopsis genome

• Host: GitHub
• URL: https://github.com/applicativesystem/arabidopsis-genome-analyzer
• Owner: applicativesystem
• License: mit
• Created: 2024-08-26T12:33:17.000Z (4 months ago)
• Default Branch: main
• Last Pushed: 2024-09-05T12:32:25.000Z (4 months ago)
• Last Synced: 2024-11-10T20:18:03.160Z (about 2 months ago)
• Topics: arabidopsis-thaliana, bioinformatics, desktop-app, desktop-application, genome-analysis, genome-annotation, webapp
• Language: Python
• Homepage:
• Size: 109 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
# streamlit-genomeannotate

- streamlit multipage desktop genome application to annotate and analyze your genome.

- supports all the functions previously presented in the Tairaccession python package. 

- Analyze genomes

- Analyze genes

- Analyze genome annotations

- Analyze Literature

- Make Vector Databases for Language Models.

![](https://github.com/codecreatede/arabidopsis-genome-analyzer/blob/main/arabidopsis.png)

**BUG check to finish today evening**

- to run the application 

```

 git clone https://githb.com/arabidopsis-genome-analyzer

 cd arabidopsis-genome-analyzer 

 pipx install virtualenv 

 virtualenv arabidopsis

 source arabidopsis/bin/activate

 pip3 install streamlit 

 streamlit run arabidopsis.py 

```

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany