https://github.com/applicativesystem/bacterial-metagenomes

bacterial mategnomes assembly and pangenomes
https://github.com/applicativesystem/bacterial-metagenomes

bacterial-genome-analysis bacterial-genomes bioinformatics metagenomics metagenomics-data pangenome

Last synced: 7 days ago
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bacterial mategnomes assembly and pangenomes

• Host: GitHub
• URL: https://github.com/applicativesystem/bacterial-metagenomes
• Owner: applicativesystem
• License: mit
• Created: 2024-08-17T19:10:28.000Z (4 months ago)
• Default Branch: main
• Last Pushed: 2024-08-17T19:13:02.000Z (4 months ago)
• Last Synced: 2024-11-10T20:18:04.207Z (about 1 month ago)
• Topics: bacterial-genome-analysis, bacterial-genomes, bioinformatics, metagenomics, metagenomics-data, pangenome
• Language: Shell
• Homepage:
• Size: 4.88 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# pangenomes-metagenomes

- complete analysis of bacterial metagenomes and pagenome graphs and direct viewing in panchae. It will also analyze metagenomes from both illumina and long reads.

- will analyze the bacterial genomes and the genoems from the assembly to the annotation using the Prokka and then will create the pangenome and the pangraphs. 

- It will also provide the support for the variant estimation. 

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany