https://github.com/applicativesystem/bash-based-otu-plotter

bash based metagenomics otu plotter before analysis
https://github.com/applicativesystem/bash-based-otu-plotter

bioinformatics genome-analysis metagenomics metagenomics-counts metagenomics-data

Last synced: 7 days ago
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bash based metagenomics otu plotter before analysis

• Host: GitHub
• URL: https://github.com/applicativesystem/bash-based-otu-plotter
• Owner: applicativesystem
• License: mit
• Created: 2024-08-20T19:02:54.000Z (4 months ago)
• Default Branch: main
• Last Pushed: 2024-08-20T20:32:59.000Z (4 months ago)
• Last Synced: 2024-11-10T20:18:04.526Z (about 1 month ago)
• Topics: bioinformatics, genome-analysis, metagenomics, metagenomics-counts, metagenomics-data
• Language: Shell
• Homepage:
• Size: 3.91 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# metagenomics-otu-plotter

- A shell plotting function that extends a ruby framework and plots the metagenomics abundances for checking the abundance distribution.

- It takes the OTU metagenomics abundances and then plot the bar and the histogram to see the distribution of the abundances.

- just run it and it will ask for the file and plots to make.

```

i am your shell plotter that uses ruby for the plotting for plotting the metagenomics abundances

gem install youplot

you have a series of the abundances or just a single file, if a single abundance then only bar and hist plot is possible

enter the filename for the metagenomics abundance:taxonomy_OTUs

enter the type of the plot:bar

enter the number of the bins:

prepairing the file for the plotting

       bar plot analysis of the metagenomics samples OTUs

```

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany