https://github.com/applicativesystem/coding-stitcher-pangenome

stitching coding regions from exon alignments for the protein to genome alignments.
https://github.com/applicativesystem/coding-stitcher-pangenome

bioinformatics genome-alignment genome-alignments genome-annotation gff-toolkit gff3 gff3-format protein-alignment protein-alignments

Last synced: 7 days ago
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stitching coding regions from exon alignments for the protein to genome alignments.

• Host: GitHub
• URL: https://github.com/applicativesystem/coding-stitcher-pangenome
• Owner: applicativesystem
• License: mit
• Created: 2024-08-21T17:59:51.000Z (4 months ago)
• Default Branch: main
• Last Pushed: 2024-08-21T18:57:29.000Z (4 months ago)
• Last Synced: 2024-11-10T20:18:04.987Z (about 1 month ago)
• Topics: bioinformatics, genome-alignment, genome-alignments, genome-annotation, gff-toolkit, gff3, gff3-format, protein-alignment, protein-alignments
• Language: Python
• Homepage:
• Size: 12.7 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# coding-stitcher-pangenome

- a coding sticher for genome annotations, which stitch all your coding regions coming out of the exon alignments.

- will produce the gene visualization for the genome browser and also for the panache.

```

codingsticher("/home/gaurav/Desktop/final_code_push/multi.gff",

            "/home/gaurav/Desktop/final_code_push/multi.fasta",

                           "/home/gaurav/Desktop/final_code_push/test.fasta")

```

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany