https://github.com/applicativesystem/go-phylogenomics-filter

go phylogenomics routines.
https://github.com/applicativesystem/go-phylogenomics-filter

bioinformatics genome-analysis genome-annotation-analysis genome-anntoation golang-application golang-package phylogenomics

Last synced: 7 days ago
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go phylogenomics routines.

• Host: GitHub
• URL: https://github.com/applicativesystem/go-phylogenomics-filter
• Owner: applicativesystem
• License: mit
• Created: 2024-09-17T11:36:02.000Z (3 months ago)
• Default Branch: main
• Last Pushed: 2024-09-24T12:46:57.000Z (3 months ago)
• Last Synced: 2024-11-10T20:18:10.428Z (about 1 month ago)
• Topics: bioinformatics, genome-analysis, genome-annotation-analysis, genome-anntoation, golang-application, golang-package, phylogenomics
• Language: Go
• Homepage:
• Size: 2.93 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# goroutines-phylogenomics-filter

- go phylogenomics routines.

- takes a alignment file, a header to write and merges all the alignment with the specified header and deletes indels

```

[gauravsablok@fedora]~/Desktop/codecreatede/goroutines-phylogenomics-filter% \

go run main.go -h

Usage of /tmp/go-build430267477/b001/exe/main:

  -alignmentfile string

        file (default "path to the alignment file")

  -title string

        gene name (default "name of the header of the gene"

[gauravsablok@fedora]~/Desktop/codecreatede/goroutines-phylogenomics-filter% \

    go run main.go -alignmentfile ./sample-files/test.fasta -title filteredphylo

> filteredphylo

 TCAGTATCTCTATCTC

```

Gaurav Sablok