https://github.com/applicativesystem/go-plotter
golang plotter for whole genome
https://github.com/applicativesystem/go-plotter
annotation-visualization bioinformatics genome-analysis genome-annotation genome-sequencing
Last synced: 3 months ago
JSON representation
golang plotter for whole genome
- Host: GitHub
- URL: https://github.com/applicativesystem/go-plotter
- Owner: applicativesystem
- Created: 2024-10-31T06:13:58.000Z (8 months ago)
- Default Branch: main
- Last Pushed: 2024-11-01T18:48:42.000Z (8 months ago)
- Last Synced: 2024-12-16T02:12:08.194Z (6 months ago)
- Topics: annotation-visualization, bioinformatics, genome-analysis, genome-annotation, genome-sequencing
- Language: Go
- Homepage:
- Size: 7.55 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# go-plotter
- annotation and genome annotation visualizer.
- takes a gff file and visualizes all the regions such as mRNA, cds, protein five prime UTR, and three prime UTR.
- uses gonum for the visualization.
```
git clone htts.github.com/go-plotter
go run main.go
```
- detail usage
```
╰─$ go run main.go -h
annotate and visualize your genome
Usage:
golanannotate [flags]
Flags:
-A, --annotationfile string genome annotation (default "path to the annotation file")
-h, --help help for golanannotate
exit status 1
```
- it will produce all the genome annotation figures
```
-rw-r--r--. 1 gauavsablok gauavsablok 16751 Nov 1 19:27 barcdsMinus.png
-rw-r--r--. 1 gauavsablok gauavsablok 17014 Nov 1 19:27 barcdsPlus.png
-rw-r--r--. 1 gauavsablok gauavsablok 16751 Nov 1 19:27 barcds.png
-rw-r--r--. 1 gauavsablok gauavsablok 18691 Nov 1 19:27 barexonMinus.png
-rw-r--r--. 1 gauavsablok gauavsablok 18152 Nov 1 19:27 barexonPlus.png
-rw-r--r--. 1 gauavsablok gauavsablok 18691 Nov 1 19:27 barexon.png
-rw-r--r--. 1 gauavsablok gauavsablok 14515 Nov 1 19:27 barfiveMinus.png
-rw-r--r--. 1 gauavsablok gauavsablok 15755 Nov 1 19:27 barfivePlus.png
-rw-r--r--. 1 gauavsablok gauavsablok 14515 Nov 1 19:27 barfive.png
-rw-r--r--. 1 gauavsablok gauavsablok 14968 Nov 1 19:27 barmRNAMinus.png
-rw-r--r--. 1 gauavsablok gauavsablok 15935 Nov 1 19:27 barmRNAPlus.png
-rw-r--r--. 1 gauavsablok gauavsablok 14968 Nov 1 19:27 barmRNA.png
-rw-r--r--. 1 gauavsablok gauavsablok 16890 Nov 1 19:27 barproteinMinus.png
-rw-r--r--. 1 gauavsablok gauavsablok 17917 Nov 1 19:27 barproteinPlus.png
-rw-r--r--. 1 gauavsablok gauavsablok 16890 Nov 1 19:27 barprotein.png
-rw-r--r--. 1 gauavsablok gauavsablok 13854 Nov 1 19:27 barthreeMinus.png
-rw-r--r--. 1 gauavsablok gauavsablok 14599 Nov 1 19:27 barthreePlus.png
-rw-r--r--. 1 gauavsablok gauavsablok 13854 Nov 1 19:27 barthree.png
```
Gaurav Sablok