https://github.com/applicativesystem/intergenic-extractor

intergenic region analyzer from protein alignments to draft genomes.
https://github.com/applicativesystem/intergenic-extractor

alignment bioinformatics genome-alignment genome-alignments genome-analysis genome-annotation protein-alignment protein-ligand-interactions

Last synced: 7 days ago
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intergenic region analyzer from protein alignments to draft genomes.

• Host: GitHub
• URL: https://github.com/applicativesystem/intergenic-extractor
• Owner: applicativesystem
• License: mit
• Created: 2024-08-21T17:58:29.000Z (4 months ago)
• Default Branch: main
• Last Pushed: 2024-08-21T18:55:09.000Z (4 months ago)
• Last Synced: 2024-11-10T20:18:11.825Z (about 1 month ago)
• Topics: alignment, bioinformatics, genome-alignment, genome-alignments, genome-analysis, genome-annotation, protein-alignment, protein-ligand-interactions
• Language: Python
• Homepage:
• Size: 13.7 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# intergenic-extractor

- extracting all the intergenic regions from the genome annotation using the protein alignments.

```

generateintergenic("/home/gaurav/Desktop/final_code_push/multi.gff",

         "/home/gaurav/Desktop/final_code_push/multi.fasta",

                   "/home/gaurav/Desktop/final_code_push/final.fasta")

```

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany