https://github.com/applicativesystem/metabolic-json

a metabolic json parser and streamlit for BIGG database
https://github.com/applicativesystem/metabolic-json

bioinformatics genome-analysis genome-bioinformatics genome-informatics json json-api json-data metabolic-models metabolic-pathways metabolic-reconstruction

Last synced: 7 days ago
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a metabolic json parser and streamlit for BIGG database

• Host: GitHub
• URL: https://github.com/applicativesystem/metabolic-json
• Owner: applicativesystem
• License: mit
• Created: 2024-08-17T18:12:23.000Z (4 months ago)
• Default Branch: main
• Last Pushed: 2024-08-17T18:15:41.000Z (4 months ago)
• Last Synced: 2024-11-10T20:18:12.721Z (about 1 month ago)
• Topics: bioinformatics, genome-analysis, genome-bioinformatics, genome-informatics, json, json-api, json-data, metabolic-models, metabolic-pathways, metabolic-reconstruction
• Language: Python
• Homepage:
• Size: 301 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# streamlit-metabolic-json-modelling

- A streamlit application for metabolic json modelling, analyzing BIGG modelling database json.

- BIGG database for metabolic reactions is located at [BIGG metabolic database](http://bigg.ucsd.edu/)

- There was no metabolic json modelling so i coded this to enable the large metabolic searches.

- Analyze any large metabolic JSON and fetch any interactions, metabolites, GPR rules and Gene Protein Interactions. 

```

git clone https://github.com/gauravcodepro/metabolic-json-modelling.git

conda install streamlit

stream run application.py

```

Gaurav \

University of Potsdam \

Potsdam,Germany