https://github.com/applicativesystem/mirna-neural-network

miRNA target predictions analyzer for neural networks
https://github.com/applicativesystem/mirna-neural-network

bioinformatics deep-learning deep-neural genome-analysis genome-annotation genome-annotation-analysis microrna micrornas micrrna-targets neural-network target-prediction-microrna

Last synced: 18 days ago
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miRNA target predictions analyzer for neural networks

• Host: GitHub
• URL: https://github.com/applicativesystem/mirna-neural-network
• Owner: applicativesystem
• License: mit
• Created: 2024-08-20T19:14:37.000Z (5 months ago)
• Default Branch: main
• Last Pushed: 2024-08-20T19:39:39.000Z (5 months ago)
• Last Synced: 2024-11-10T20:18:13.645Z (about 2 months ago)
• Topics: bioinformatics, deep-learning, deep-neural, genome-analysis, genome-annotation, genome-annotation-analysis, microrna, micrornas, micrrna-targets, neural-network, target-prediction-microrna
• Language: Python
• Homepage:
• Size: 13.1 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
# miRNA-neural-network

- A function to prepare the neural network sequence for the miRNA predictions.

- It uses the target prediction and the transcript and prepares the targets for the neural networks.

- a machine learning preparation for the microRNAs after the target predictions.

- It will extract the  microRNA binding sites and also the upstream and the dowstream to prepare for the motif machine learning.

```

preparemiRNAsML("/Users/gauravsablok/Desktop/release/Athaliana_167_TAIR10.transcript.fa", \

                                                "/Users/gauravsablok/Desktop/release/test.txt", \

                                                                 expectation_value="0.0", \

                                                                  upstream = 100, downstream=100)

````

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany