https://github.com/applicativesystem/ontology-graphs

analyzing ontology for graph analysis
https://github.com/applicativesystem/ontology-graphs

bioinformatics domain-graphs genome-analysis genome-annotation ontology ontology-graphs ontology-search

Last synced: 26 days ago
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analyzing ontology for graph analysis

• Host: GitHub
• URL: https://github.com/applicativesystem/ontology-graphs
• Owner: applicativesystem
• License: mit
• Created: 2024-08-17T08:10:23.000Z (5 months ago)
• Default Branch: main
• Last Pushed: 2024-10-04T16:48:40.000Z (3 months ago)
• Last Synced: 2024-11-10T20:18:16.604Z (2 months ago)
• Topics: bioinformatics, domain-graphs, genome-analysis, genome-annotation, ontology, ontology-graphs, ontology-search
• Language: Python
• Homepage:
• Size: 13 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
### a streamlit application for interacting with the arabidopsis ontolgoies

- analyzes all the plant ontologies.

- analyzes also the association of the plant ontologies with the plant obo terms.

- analyzes also the name suggestions.

- analyzes also the names for the ontologies.

- provide the file path to the po_anatomy_gene_arabidopsis_tair.assoc and po.obo and to.obo for analysis

```

conda install streamlit

git clone https://github.com/gauravcodepro/streamlit-arabidopsis-ontology-graphs.git

cd streamlit-arabidopsis-ontology-graphs

streamlit run arabidopsis-app.py

```

- Following the prompt resources for this application.

- if arabidopsis ID, then it will prompt you to choose what you want

- if plant obo then it will give the functions.

- if arabidopsis ID then it will give the functions.

- if arabidopsis ID then it will give the functions.

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany