https://github.com/applicativesystem/phytozome-pacid-fetcher

analyzer for phytozome gff files and pacid for genes.
https://github.com/applicativesystem/phytozome-pacid-fetcher

bioinformatics genome-analysis gff gff-toolkit gff3 phytozome phytozome-genome-analyzer

Last synced: 7 days ago
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analyzer for phytozome gff files and pacid for genes.

• Host: GitHub
• URL: https://github.com/applicativesystem/phytozome-pacid-fetcher
• Owner: applicativesystem
• License: mit
• Created: 2024-08-21T18:15:54.000Z (4 months ago)
• Default Branch: main
• Last Pushed: 2024-08-21T19:50:52.000Z (4 months ago)
• Last Synced: 2024-11-10T20:18:16.386Z (about 1 month ago)
• Topics: bioinformatics, genome-analysis, gff, gff-toolkit, gff3, phytozome, phytozome-genome-analyzer
• Language: Python
• Homepage:
• Size: 7.44 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# phytozome-pacid-fetcher

- this function takes ids file with the gene of interest and the phytozome gff files and will fetch the pacid for the genes of interest.

- much faster than the online version as it uses a dataframe approach.

- I have added two additional functions which will help you process the raw files from the phytozome for the pacid analysis.

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany