https://github.com/applicativesystem/plant-resistance-gene-miner

plant resistance gene miner for linking the resistance gene to genbank id.
https://github.com/applicativesystem/plant-resistance-gene-miner

bioinformatics genome-analysis genome-annotation plant-diseaase-detection plant-disease-detection plant-genomics plant-informatics plant-resistance-genes

Last synced: 6 months ago
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plant resistance gene miner for linking the resistance gene to genbank id.

• Host: GitHub
• URL: https://github.com/applicativesystem/plant-resistance-gene-miner
• Owner: applicativesystem
• License: mit
• Created: 2024-08-21T18:07:07.000Z (10 months ago)
• Default Branch: main
• Last Pushed: 2024-08-21T19:16:36.000Z (10 months ago)
• Last Synced: 2024-11-10T20:18:16.930Z (8 months ago)
• Topics: bioinformatics, genome-analysis, genome-annotation, plant-diseaase-detection, plant-disease-detection, plant-genomics, plant-informatics, plant-resistance-genes
• Language: Python
• Homepage:
• Size: 1000 Bytes
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# plant-resistance-gene-miner

- I coded this plant resistance gene miner which uses a regular expression plus a web scrap approach and given a resistance gene id, it will return the genbank id.

```python

# to use simply use the id from the plant resistance gene database \

         : http://www.prgdb.org/prgdb/ with the PRGDB, just the number

mineResistanceGenes(141)

'4689222'

```

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany