https://github.com/applicativesystem/rust-fastp-clip
rust-fastp-clip
https://github.com/applicativesystem/rust-fastp-clip
Last synced: 10 months ago
JSON representation
rust-fastp-clip
- Host: GitHub
- URL: https://github.com/applicativesystem/rust-fastp-clip
- Owner: applicativesystem
- License: mit
- Created: 2024-11-20T17:12:41.000Z (over 1 year ago)
- Default Branch: main
- Last Pushed: 2024-11-20T17:17:05.000Z (over 1 year ago)
- Last Synced: 2024-11-20T18:25:33.168Z (over 1 year ago)
- Language: Rust
- Size: 4.88 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# rust-fastp-clip
- rust-fastp-clip
- provide the reads in the fastq from novaseq, nextseq and clip the regions according to your choice.
- a standalone application as well as a part of the rust-fastp package, faster than the fastp using tokio and async programming.
- no external dependencies, pure datastructure approach.
- build the release binary
```
cargo build
```
- run the compiled binary
```
./rust-fastp-clip ./sample-files/samp2_L001_R1_001.fastq ./sample-files/samp2_L001_R2_001.fastq 0 10
```
Gaurav Sablok