https://github.com/applicativesystem/rust-fastp-clip-base
rust fastp quality drop
https://github.com/applicativesystem/rust-fastp-clip-base
bioinformatics genome-analysis genome-sequencing illumina illumina-sequencing
Last synced: 6 months ago
JSON representation
rust fastp quality drop
- Host: GitHub
- URL: https://github.com/applicativesystem/rust-fastp-clip-base
- Owner: applicativesystem
- License: mit
- Created: 2024-11-21T19:33:35.000Z (7 months ago)
- Default Branch: main
- Last Pushed: 2024-11-22T21:26:55.000Z (7 months ago)
- Last Synced: 2024-11-22T22:27:24.146Z (7 months ago)
- Topics: bioinformatics, genome-analysis, genome-sequencing, illumina, illumina-sequencing
- Language: Rust
- Homepage:
- Size: 110 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# rust-fastp-clip-base
- rust-fastp-clip-base
- specifically dropping quality at specific bases.
- It generates 4 files ones with the dropped quality at that base and the ones with the all quality dropped below that base.
- general note: Incase of Golang and RUST, please see the last commit message and if it says compiled binary then it is completed or else still in development version.
```
cargo build
```
- to run the compiled binary.
```
./target/debug/rust-fastp-clip-base ./sample-files/test1.fastq ./sample-files/test2.fastq 30
```
Gaurav Sablok