https://github.com/applicativesystem/rust-jellyfish
rust-jellyfish implementation for genome
https://github.com/applicativesystem/rust-jellyfish
bioinformatics genome-analysis genome-sequencing jellyfish rust-crate rust-lang rust-library
Last synced: 7 months ago
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rust-jellyfish implementation for genome
- Host: GitHub
- URL: https://github.com/applicativesystem/rust-jellyfish
- Owner: sciencegenome
- License: mit
- Created: 2024-11-04T13:32:12.000Z (11 months ago)
- Default Branch: main
- Last Pushed: 2025-01-15T20:26:52.000Z (9 months ago)
- Last Synced: 2025-02-11T11:06:11.946Z (8 months ago)
- Topics: bioinformatics, genome-analysis, genome-sequencing, jellyfish, rust-crate, rust-lang, rust-library
- Language: Rust
- Homepage:
- Size: 44.9 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# rust-jellyfish
- a rust implementation of the jellyfish for the counts.
- outputs both the unique counts, all counts.
- directly plots the histograms from the counts using the rust plotters.
- it will produce allkmers, uniquekmers, countkmers
- available as crate [rust-jellyfish](https://crates.io/crates/kmerjellyfish)
```
Usage: kmerjellyfish
Arguments:
please provide the kmer to be searched for the origin
please provide the path to be searched for the strings containing the kmer
Options:
-h, --help Print help
-V, --version Print version
kmerjellyfish 4 ./sample-files/test.fastq
```
Gaurav Sablok