https://github.com/applicativesystem/rust-pangenome
rust pangenome for pangenome alignments
https://github.com/applicativesystem/rust-pangenome
bioinformatics genome-analysis metagenomics metagenomics-data rust-lang
Last synced: 11 days ago
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rust pangenome for pangenome alignments
- Host: GitHub
- URL: https://github.com/applicativesystem/rust-pangenome
- Owner: applicativesystem
- License: mit
- Created: 2024-11-05T12:32:11.000Z (6 months ago)
- Default Branch: main
- Last Pushed: 2024-11-12T22:10:02.000Z (5 months ago)
- Last Synced: 2025-01-07T14:12:00.247Z (4 months ago)
- Topics: bioinformatics, genome-analysis, metagenomics, metagenomics-data, rust-lang
- Language: Rust
- Homepage:
- Size: 3.13 MB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# rust-pangenome
- pangenome extraction following the protein alignment.
- extract the sequences from the alignment for all the regions that were aligned.
- writing code for all these separately and after that it will be merged into a single rust-webapplication using the Actix frame.
```
cargo build
./target/debug/rust-pangenome ./sample-files/aln.gff ./sample-files/final.fa
```
Gaurav Sablok