https://github.com/applicativesystem/rust-pangenome

rust pangenome for pangenome alignments
https://github.com/applicativesystem/rust-pangenome

bioinformatics genome-analysis metagenomics metagenomics-data rust-lang

Last synced: about 1 month ago
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rust pangenome for pangenome alignments

• Host: GitHub
• URL: https://github.com/applicativesystem/rust-pangenome
• Owner: applicativesystem
• License: mit
• Created: 2024-11-05T12:32:11.000Z (about 2 months ago)
• Default Branch: main
• Last Pushed: 2024-11-08T22:27:23.000Z (about 1 month ago)
• Last Synced: 2024-11-10T20:18:17.846Z (about 1 month ago)
• Topics: bioinformatics, genome-analysis, metagenomics, metagenomics-data, rust-lang
• Language: Rust
• Homepage:
• Size: 20.5 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# rust-pangenome

- pangenome extraction following the protein alignment. 

- extract the sequences from the alignment for all the regions that were aligned.

- writing code for all these separately and after that it will be merged into a single rust-webapplication using the Actix frame. 

```

cargo build 

./target/debug/rust-pangenome ./sample-files/aln.gff ./sample-files/final.fa

```

Gaurav Sablok