https://github.com/applicativesystem/snakemake-utility

bash based utility for writing the snakemake iteration
https://github.com/applicativesystem/snakemake-utility

bioinformatics genome-analysis shell-script snakemake snakemake-pipeline snakemake-wrappers

Last synced: about 1 year ago
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bash based utility for writing the snakemake iteration

• Host: GitHub
• URL: https://github.com/applicativesystem/snakemake-utility
• Owner: applicativesystem
• License: mit
• Created: 2024-08-20T18:57:18.000Z (almost 2 years ago)
• Default Branch: main
• Last Pushed: 2024-08-20T20:28:10.000Z (almost 2 years ago)
• Last Synced: 2024-12-16T02:12:05.386Z (over 1 year ago)
• Topics: bioinformatics, genome-analysis, shell-script, snakemake, snakemake-pipeline, snakemake-wrappers
• Language: Shell
• Homepage:
• Size: 1000 Bytes
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# snakemake-iterations

- snakemake files writer bash based and completely from the single files or from the list of the files with the path appended.

- This will make your writing the snakemake easier.

- The complete code inside, a look at how to write faster snakemake files for the clusters.

- You dont have to apply the brace expansion in case of the multiple files.

- Later appending more to the same for the PacBiohifi/HiC/Illumina/OxfordNanopore depending upon the time availability.

Gaurav Sablok \

University of Potsdam,\

Potsdam,Germany