https://github.com/applicativesystem/trinity-transdecoder-view

a trinity transdecoder utility for getting information from the trinity transcript assembly
https://github.com/applicativesystem/trinity-transdecoder-view

bioinformatics bioinformatics-analysis genome-analysis python-3 transcriptomics trinity

Last synced: about 1 month ago
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a trinity transdecoder utility for getting information from the trinity transcript assembly

• Host: GitHub
• URL: https://github.com/applicativesystem/trinity-transdecoder-view
• Owner: applicativesystem
• License: mit
• Created: 2024-08-17T19:28:32.000Z (5 months ago)
• Default Branch: main
• Last Pushed: 2024-08-17T19:29:57.000Z (5 months ago)
• Last Synced: 2024-11-10T20:18:19.696Z (about 2 months ago)
• Topics: bioinformatics, bioinformatics-analysis, genome-analysis, python-3, transcriptomics, trinity
• Language: Python
• Homepage:
• Size: 2.93 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# transdecoder-visualization

a regular expression based trinity assembly transdecoder predictions encoder which will parse and will prepare the transcript annotations for visualization with any genome visualization kit such as pygenomeviz, mauve and others, it prepares the coordinates as tuples. 

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany