https://github.com/applicativesystem/trinity-transdecoder-view

a trinity transdecoder utility for getting information from the trinity transcript assembly
https://github.com/applicativesystem/trinity-transdecoder-view

bioinformatics bioinformatics-analysis genome-analysis python-3 transcriptomics trinity

Last synced: 8 months ago
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a trinity transdecoder utility for getting information from the trinity transcript assembly

• Host: GitHub
• URL: https://github.com/applicativesystem/trinity-transdecoder-view
• Owner: IBCHgenomic
• License: mit
• Created: 2024-08-17T19:28:32.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2024-08-17T19:29:57.000Z (over 1 year ago)
• Last Synced: 2025-03-11T23:15:36.416Z (about 1 year ago)
• Topics: bioinformatics, bioinformatics-analysis, genome-analysis, python-3, transcriptomics, trinity
• Language: Python
• Homepage:
• Size: 2.93 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# transdecoder-visualization

a regular expression based trinity assembly transdecoder predictions encoder which will parse and will prepare the transcript annotations for visualization with any genome visualization kit such as pygenomeviz, mauve and others, it prepares the coordinates as tuples. 

Gaurav Sablok \

University of Potsdam \

Potsdam,Germany