https://github.com/aqlaboratory/hth-dna-db

Database of HTH-DNA complexes
https://github.com/aqlaboratory/hth-dna-db

machine-learning protein-dna-interactions protein-structure transcription-factor-binding transcriptional-regulatory-network

Last synced: about 1 month ago
JSON representation

Database of HTH-DNA complexes

• Host: GitHub
• URL: https://github.com/aqlaboratory/hth-dna-db
• Owner: aqlaboratory
• Created: 2015-08-23T13:40:27.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2015-08-23T14:58:50.000Z (over 9 years ago)
• Last Synced: 2024-04-18T05:14:54.361Z (8 months ago)
• Topics: machine-learning, protein-dna-interactions, protein-structure, transcription-factor-binding, transcriptional-regulatory-network
• Language: Mathematica
• Size: 4.18 MB
• Stars: 1
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

        
# hth-dna-db

Database of HTH-DNA complexes

This repository contains a database of structurally aligned helix-turn-helix (HTH) protein-DNA complexes along with their experimentally derived position-weight matrices. The source code (written in the Wolfram Language) for generating new databases with different parameter choices is also available in this repository. To faciliate the process of generating new databases, a Mathematica notebook that provides a walk through is provided in the notebook directory.