https://github.com/aqlaboratory/hth-dna-db
Database of HTH-DNA complexes
https://github.com/aqlaboratory/hth-dna-db
machine-learning protein-dna-interactions protein-structure transcription-factor-binding transcriptional-regulatory-network
Last synced: 5 months ago
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Database of HTH-DNA complexes
- Host: GitHub
- URL: https://github.com/aqlaboratory/hth-dna-db
- Owner: aqlaboratory
- Created: 2015-08-23T13:40:27.000Z (almost 11 years ago)
- Default Branch: master
- Last Pushed: 2015-08-23T14:58:50.000Z (almost 11 years ago)
- Last Synced: 2025-01-08T07:26:09.659Z (over 1 year ago)
- Topics: machine-learning, protein-dna-interactions, protein-structure, transcription-factor-binding, transcriptional-regulatory-network
- Language: Mathematica
- Size: 4.18 MB
- Stars: 1
- Watchers: 3
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# hth-dna-db
Database of HTH-DNA complexes
This repository contains a database of structurally aligned helix-turn-helix (HTH) protein-DNA complexes along with their experimentally derived position-weight matrices. The source code (written in the Wolfram Language) for generating new databases with different parameter choices is also available in this repository. To faciliate the process of generating new databases, a Mathematica notebook that provides a walk through is provided in the notebook directory.