https://github.com/arkanosis/abi2csv

Base caller to convert electrophoregrams data in ABIF to nucleotide sequences in CSV
https://github.com/arkanosis/abi2csv

ab1 abi abif csv

Last synced: 23 days ago
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Base caller to convert electrophoregrams data in ABIF to nucleotide sequences in CSV

• Host: GitHub
• URL: https://github.com/arkanosis/abi2csv
• Owner: Arkanosis
• Created: 2020-03-21T21:07:53.000Z (almost 5 years ago)
• Default Branch: master
• Last Pushed: 2020-03-21T21:08:06.000Z (almost 5 years ago)
• Last Synced: 2024-11-28T22:31:54.075Z (3 months ago)
• Topics: ab1, abi, abif, csv
• Language: Python
• Size: 3.91 KB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# abi2csv [![License](https://img.shields.io/badge/license-ISC-blue.svg)](/LICENSE)

**abi2csv** is a base caller which converts electrophoregram raw data in the ABIF format to reusable sequences in CSV format.

## Current Status

abi2csv is only at very first developement step, but it can already be used — just don't trust its output too much.

## Compilation

Run `poetry build` in your working copy.

## Usage

```

Usage: abi2csv  > output.csv

Arguments:

    input.ab1 raw electrophoregram data in the ABIF format

```

## Contributing and reporting bugs

Contributions are welcome through [GitHub pull requests](https://github.com/Arkanosis/abi2csv/pulls).

Please report bugs and feature requests on [GitHub issues](https://github.com/Arkanosis/abi2csv/issues).

## License

abi2csv is copyright (C) 2020 Jérémie Roquet  and licensed under the ISC license.