https://github.com/arkitektio-apps/mikro-napari

napari within the mikro environment
https://github.com/arkitektio-apps/mikro-napari

automation microscopy microscopy-data napari napari-plugin

Last synced: 19 days ago
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napari within the mikro environment

• Host: GitHub
• URL: https://github.com/arkitektio-apps/mikro-napari
• Owner: arkitektio-apps
• Created: 2021-11-22T18:06:52.000Z (about 3 years ago)
• Default Branch: master
• Last Pushed: 2024-06-30T12:30:41.000Z (6 months ago)
• Last Synced: 2024-12-15T06:10:48.469Z (21 days ago)
• Topics: automation, microscopy, microscopy-data, napari, napari-plugin
• Language: Python
• Homepage: https://jhnnsrs.github.io/mikro-napari/
• Size: 1.04 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# mikro-napari

[![codecov](https://codecov.io/gh/jhnnsrs/mikro-napari/branch/master/graph/badge.svg?token=UGXEA2THBV)](https://codecov.io/gh/jhnnsrs/mikro-napari)

[![PyPI version](https://badge.fury.io/py/mikro-napari.svg)](https://pypi.org/project/mikro-napari/)

[![Maintenance](https://img.shields.io/badge/Maintained%3F-yes-green.svg)](https://pypi.org/project/mikro-napari/)

![Maintainer](https://img.shields.io/badge/maintainer-jhnnsrs-blue)

[![PyPI pyversions](https://img.shields.io/pypi/pyversions/mikro-napari.svg)](https://pypi.python.org/pypi/mikro-napari/)

[![PyPI status](https://img.shields.io/pypi/status/mikro-napari.svg)](https://pypi.python.org/pypi/mikro-napari/)

mikro napari enables napari on the mikro/arkitekt platform

## Idea

This is a napari plugin, that provides a simple user interface to use napari with mikro you can view and annotate

data on the mikro platform (synchronised between all of your napari instances) and use napari within arkitekt workflows

(can be extended with other plugins)

## Install

This plugin is available on the napari plugin-manager, where you can install it through

the UI.Login with your local mikro/arkitekt platform and start using it in workflows

You can also install mikro-napari directly in your enviroment 

```bash

pip install mikro-napari napari[pyqt5]

```

## Usage

If you want to start the plugin from the command line, you can use the following command

```bash

mikro-napari

```

This  starts napari with the mikro-napari plugin enabled by default.

For more information on how to use mikro-napari check out the [documentation](https://arkitekt.live)

## Development

If you want to contribute to this project, you can clone the repository and install the package in development mode

```bash

git clone

cd mikro-napari

poetry install --all-extras

```

This will install the package in development mode and install all dependencies.