https://github.com/arrjon/arrjon
https://github.com/arrjon/arrjon
Last synced: 4 months ago
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- Host: GitHub
- URL: https://github.com/arrjon/arrjon
- Owner: arrjon
- Created: 2025-10-28T14:43:33.000Z (7 months ago)
- Default Branch: main
- Last Pushed: 2026-02-06T14:55:13.000Z (4 months ago)
- Last Synced: 2026-02-06T22:23:34.426Z (4 months ago)
- Size: 6.84 KB
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# Jonas Arruda
PhD Candidate in Mathematics at the University of Bonn
Researcher at the Bonn Center for Mathematics and Life Sciences (BCMLS) and the LIMES Institute
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## 🔬 Research Focus
I work at the interface of **machine learning**, **probability**, and **biological modeling**.
My current projects focus on:
- **Simulation-based inference** for mechanistic simulations
- Scalable **Bayesian inference** for large hierarchical dynamical systems
- **Diffusion models** and **amortized inference** for interpretable scientific modeling
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## 📄 Selected Publications
- *Diffusion Models In Simulation-Based Inference: A Tutorial Review*
*(preprint)* [https://bayesflow-org.github.io/diffusion-experiments/](https://bayesflow-org.github.io/diffusion-experiments/)
- *Simulation-Based Inference of Cell Migration Dynamics in Complex Spatial Environments*
*(npj Systems Biology and Applications, 2026)* [doi:10.1038/s41540-026-00648-9](https://doi.org/10.1038/s41540-026-00648-9)
- *Compositional Amortized Inference for Large-Scale Hierarchical Bayesian Models*
*(ICLR 2026)* [doi:10.48550/arXiv.2505.14429](https://doi.org/10.48550/arXiv.2505.14429)
- *An Amortized Approach to Nonlinear Mixed-Effects Modeling Based on Neural Posterior Estimation*
*(ICML 2024)* [https://proceedings.mlr.press/v235/arruda24a.html](https://proceedings.mlr.press/v235/arruda24a.html)
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